MLOC_63505 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains44.341336.214735.72841.9226
LEAShoots from the seedlings (10 cm shoot stage)31.751813.446814.850317.3278
INF1Young developing inflorescences (5mm)27.913125.998228.641125.5896
INF2Developing inflorescences (1-1.5 cm)25.808523.351528.577530.5559
ROORoots from the seedlings (10 cm shoot stage)33.374834.555324.052143.2692
NODDeveloping tillers at six leaf stage, 3rd internode12.127116.58215.4642748.8194
CAR5Developing grain, bracts removed (5 DPA)20.0318.155916.657119.6966
CAR15Developing grain, bracts removed (15 DPA)8.625537.257429.2816721.2828



CDS Structure of MLOC_63505






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63505.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_63505.1CUST_14563_PI427708080AvailableAvailablecontig_476523 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g31970.1 +2 0.0 712 461/535 (86%) 13109.m03170 protein 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed
TAIR PP10 AT1G76490.1 +2 0.0 595 375/532 (70%) | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy methylglutaryl CoA reductase 1 | chr1:28695801-28698206 FORWARD LENGTH=642