MLOC_6342 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.070213.321513.054613.1757
LEAShoots from the seedlings (10 cm shoot stage)12.58349.6105810.98749.66185
INF1Young developing inflorescences (5mm)20.354720.707120.320216.7535
INF2Developing inflorescences (1-1.5 cm)14.477716.558714.707916.3443
ROORoots from the seedlings (10 cm shoot stage)13.046612.823613.195115.2968
NODDeveloping tillers at six leaf stage, 3rd internode8.5486118.450117.133851.3972
CAR5Developing grain, bracts removed (5 DPA)12.550913.381414.754812.9723
CAR15Developing grain, bracts removed (15 DPA)4.216764.207173.923889.37924



CDS Structure of MLOC_6342






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_6342.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_6342.1CUST_14552_PI427708080AvailableAvailablecontig_137399 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g46150.1 -2 0.0 546 258/284 (91%) 13102.m05178 protein GAMM1 protein-like, putative, expressed
TAIR PP10 AT5G41970.1 -2 4e-156 467 217/282 (77%) Metal-dependent protein hydrolase | chr5:16791198-16792961 FORWARD LENGTH=373