- Predicted Gene MLOC_63303
MLOC_63303 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 69.0664 | 62.9974 | 66.8559 | 66.6837 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 91.7785 | 107.48 | 91.2418 | 79.822 |
INF1 | Young developing inflorescences (5mm) | 56.4068 | 70.9543 | 73.254 | 55.4821 |
INF2 | Developing inflorescences (1-1.5 cm) | 80.0174 | 72.7006 | 65.527 | 79.4752 |
ROO | Roots from the seedlings (10 cm shoot stage) | 114.306 | 107.558 | 85.0764 | 125.48 |
NOD | Developing tillers at six leaf stage, 3rd internode | 78.5493 | 87.2727 | 112.799 | 284.112 |
CAR5 | Developing grain, bracts removed (5 DPA) | 82.2126 | 78.9552 | 83.4613 | 78.9915 |
CAR15 | Developing grain, bracts removed (15 DPA) | 54.2455 | 58.9429 | 51.2194 | 123.923 |
CDS Structure of MLOC_63303
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_63303.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g71050.1 |
-1 |
3e-150 |
441 |
255/397 (64%) |
13101.m07736 protein MSP domain containing protein, putative, expressed |
TAIR PP10 |
AT1G08820.2 |
-1 |
2e-50 |
180 |
138/391 (35%) |
| Symbols: VAP27-2 | vamp/synaptobrevin-associated protein 27-2 | chr1:2821810-2824412 REVERSE LENGTH=386 |