MLOC_63287 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.499621.132320.626218.0754
LEAShoots from the seedlings (10 cm shoot stage)10.16752.62763.395814.43317
INF1Young developing inflorescences (5mm)38.643839.99143.878431.7912
INF2Developing inflorescences (1-1.5 cm)42.322554.760648.156548.4935
ROORoots from the seedlings (10 cm shoot stage)13.904319.20313.951217.9944
NODDeveloping tillers at six leaf stage, 3rd internode2.034993.068841.950577.99855
CAR5Developing grain, bracts removed (5 DPA)47.65446.86144.478640.123
CAR15Developing grain, bracts removed (15 DPA)3.855053.067855.208818.39551



CDS Structure of MLOC_63287






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63287.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372897NoneNoneNoneNone
MLOC_63287.1CUST_4775_PI427708080AvailableAvailablecontig_47457 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g58470.1 -3 0.0 1263 625/712 (88%) 13104.m06141 protein choline transporter-related, putative, expressed
TAIR PP10 AT3G15380.1 -3 0.0 1005 488/712 (69%) Plasma-membrane choline transporter family protein | chr3:5193319-5196435 FORWARD LENGTH=700