MLOC_63249 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.07309380.06295230.180160.122334
LEAShoots from the seedlings (10 cm shoot stage)1.111791.970663.026622.05054
INF1Young developing inflorescences (5mm)0.1077250.1503420.1399050.130096
INF2Developing inflorescences (1-1.5 cm)0.7374310.8314481.179251.12933
ROORoots from the seedlings (10 cm shoot stage)3.373931.932351.01542.86917
NODDeveloping tillers at six leaf stage, 3rd internode0.024747900.02723910.0277628
CAR5Developing grain, bracts removed (5 DPA)4.622316.548926.318577.09143
CAR15Developing grain, bracts removed (15 DPA)2.164242.380721.030635.49517



CDS Structure of MLOC_63249






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63249.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_63249.2CUST_14530_PI427708080AvailableAvailablecontig_47432 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g13580.1 +1 2e-62 209 161/272 (59%) 13106.m01497 protein expressed protein
TAIR PP10 AT3G28370.1 +1 3e-29 116 89/227 (39%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51430.1); Has 6174 Blast hits to 4953 proteins in 685 species: Archae - 195; Bacteria - 792; Metazoa - 2688; Fungi - 653; Plants - 470; Viruses - 15; Other Eukaryotes - 1361 (source: NCBI BLink). | chr3:10620627-10623259 FORWARD LENGTH=292