MLOC_63209 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.705950.9230191.284061.36098
LEAShoots from the seedlings (10 cm shoot stage)1.631891.57641.9471.27547
INF1Young developing inflorescences (5mm)1.859492.038152.001681.81217
INF2Developing inflorescences (1-1.5 cm)1.64231.879861.141.93575
ROORoots from the seedlings (10 cm shoot stage)2.579881.030.8902931.16971
NODDeveloping tillers at six leaf stage, 3rd internode0.7024090.7133892.036942.51169
CAR5Developing grain, bracts removed (5 DPA)1.554421.630951.394771.64265
CAR15Developing grain, bracts removed (15 DPA)0.1798720.08956780.07710670.317152



CDS Structure of MLOC_63209






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63209.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_63209.1CUST_14523_PI427708080AvailableAvailablecontig_47394 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g28340.1 -3 2e-163 474 278/357 (78%) 13109.m02793 protein expressed protein
TAIR PP10 AT3G50340.1 -3 3e-96 301 191/371 (51%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67020.1); Has 128 Blast hits to 128 proteins in 39 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 3; Plants - 76; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:18665333-18666544 REVERSE LENGTH=403