MLOC_63093 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.58689.3115310.921611.0585
LEAShoots from the seedlings (10 cm shoot stage)4.208613.149614.551233.41264
INF1Young developing inflorescences (5mm)3.500974.689155.040223.74222
INF2Developing inflorescences (1-1.5 cm)2.560032.96012.208742.90494
ROORoots from the seedlings (10 cm shoot stage)11.85366.560537.247768.93042
NODDeveloping tillers at six leaf stage, 3rd internode5.487895.207543.5172714.8836
CAR5Developing grain, bracts removed (5 DPA)3.173673.608263.310813.29854
CAR15Developing grain, bracts removed (15 DPA)7.375275.689415.135914.8329



CDS Structure of MLOC_63093






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_63093.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_63093.2CUST_8566_PI427708083AvailableAvailablecontig_47262 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g42650.1 +3 2e-58 203 96/110 (87%) 13101.m04385 protein cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed
TAIR PP10 AT3G15640.2 +3 9e-42 155 69/102 (68%) Rubredoxin-like superfamily protein | chr3:5299273-5301371 FORWARD LENGTH=175