MLOC_62978 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.687845.473826.01135.59435
LEAShoots from the seedlings (10 cm shoot stage)2.467922.411673.914332.3262
INF1Young developing inflorescences (5mm)0.05818160.027898700.0402729
INF2Developing inflorescences (1-1.5 cm)00.012805100.0211708
ROORoots from the seedlings (10 cm shoot stage)75.369864.756170.548371.8378
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)2.327232.63732.578112.59512
CAR15Developing grain, bracts removed (15 DPA)0.3430340.03841290.3387720.568413



CDS Structure of MLOC_62978






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62978.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367428NoneNoneNoneNone
MLOC_62978.1CUST_4726_PI427708080AvailableAvailablecontig_47152 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g42200.1 +1 0.0 1146 665/782 (85%) 13112.m04430 protein ATCHX, putative, expressed
TAIR PP10 AT3G17630.1 +1 0.0 860 506/792 (64%) | Symbols: ATCHX19, CHX19 | cation/H+ exchanger 19 | chr3:6029201-6031773 FORWARD LENGTH=800