MLOC_62977 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.427112.375113.038512.383
LEAShoots from the seedlings (10 cm shoot stage)10.97473.674464.030225.4829
INF1Young developing inflorescences (5mm)42.318345.747543.953336.4766
INF2Developing inflorescences (1-1.5 cm)32.799538.850234.989238.9766
ROORoots from the seedlings (10 cm shoot stage)8.693313.68589.0751715.2739
NODDeveloping tillers at six leaf stage, 3rd internode3.036413.408655.1558112.4925
CAR5Developing grain, bracts removed (5 DPA)13.864414.643814.33813.9191
CAR15Developing grain, bracts removed (15 DPA)3.738693.097333.68547.82117



CDS Structure of MLOC_62977






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62977.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_62977.1CUST_14499_PI427708080AvailableAvailablecontig_47148 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g08729.1 -2 0.0 1014 549/626 (88%) 13107.m00867 protein ATP-dependent DNA helicase 2 subunit 1, putative, expressed
TAIR PP10 AT1G16970.1 -2 0.0 743 376/628 (60%) | Symbols: KU70, ATKU70 | KU70 homolog | chr1:5801159-5805724 REVERSE LENGTH=621