MLOC_62948 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.06871030.058878100.0814523
LEAShoots from the seedlings (10 cm shoot stage)0.3253650.3362320.282110.265425
INF1Young developing inflorescences (5mm)0.17971200.1493130.129993
INF2Developing inflorescences (1-1.5 cm)0.1508550.14180600.197603
ROORoots from the seedlings (10 cm shoot stage)0.114090.064884400.15626
NODDeveloping tillers at six leaf stage, 3rd internode00.0698950.03475960.306732
CAR5Developing grain, bracts removed (5 DPA)0.2406730.05447020.06689560.108627
CAR15Developing grain, bracts removed (15 DPA)0.189337000.706448



CDS Structure of MLOC_62948






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62948.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_62948.1CUST_8552_PI427708083AvailableAvailablecontig_47116 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g50192.1 -3 4e-84 277 144/308 (47%) 13104.m05138 protein retrotransposon protein, putative, LINE subclass
TAIR PP10 AT1G43760.1 -3 1e-11 66 44/176 (25%) DNAse I-like superfamily protein | chr1:16528880-16531065 REVERSE LENGTH=626