MLOC_62908 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains256.188189.277178.564205.473
LEAShoots from the seedlings (10 cm shoot stage)81.922536.569652.708250.0038
INF1Young developing inflorescences (5mm)273.315257.118255.272222.595
INF2Developing inflorescences (1-1.5 cm)168.703172.023183.934194.035
ROORoots from the seedlings (10 cm shoot stage)143.873140.256188.398182.529
NODDeveloping tillers at six leaf stage, 3rd internode14.615210.703623.015143.8558
CAR5Developing grain, bracts removed (5 DPA)109.159120.73112.054114.162
CAR15Developing grain, bracts removed (15 DPA)23.482925.492720.732556.0308



CDS Structure of MLOC_62908






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62908.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369508NoneNoneNoneNone
MLOC_62908.1CUST_4716_PI427708080AvailableAvailablecontig_47084 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g48320.1 -1 6e-61 189 92/92 (100%) 13105.m05135 protein 60S ribosomal protein L37a, putative, expressed
TAIR PP10 AT3G10950.1 -1 1e-57 180 86/92 (93%) Zinc-binding ribosomal protein family protein | chr3:3423893-3424566 FORWARD LENGTH=92