MLOC_62873 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains36.144628.338429.875431.3649
LEAShoots from the seedlings (10 cm shoot stage)44.41836.1663810.649817.061
INF1Young developing inflorescences (5mm)3.941493.761123.395433.38013
INF2Developing inflorescences (1-1.5 cm)4.954375.631527.920467.23564
ROORoots from the seedlings (10 cm shoot stage)18.080118.664716.060421.6931
NODDeveloping tillers at six leaf stage, 3rd internode17.955214.040814.956939.5179
CAR5Developing grain, bracts removed (5 DPA)35.960537.650834.590939.0064
CAR15Developing grain, bracts removed (15 DPA)38.175235.035628.669490.4829



CDS Structure of MLOC_62873






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62873.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250445.1NoneNoneNoneNone
MLOC_62873.1CUST_4708_PI427708080AvailableAvailablecontig_47053 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g13920.1 +2 9e-134 397 187/272 (69%) 13108.m01491 protein glycosyl hydrolases family 16, putative, expressed
TAIR PP10 AT5G57560.1 +2 6e-79 254 127/276 (46%) | Symbols: TCH4, XTH22 | Xyloglucan endotransglucosylase/hydrolase family protein | chr5:23307296-23308235 REVERSE LENGTH=284