MLOC_62855 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains33.744225.290126.106428.3734
LEAShoots from the seedlings (10 cm shoot stage)19.012816.480320.977816.0247
INF1Young developing inflorescences (5mm)16.869819.654421.114116.2408
INF2Developing inflorescences (1-1.5 cm)19.245220.448223.377423.0597
ROORoots from the seedlings (10 cm shoot stage)38.121232.987729.662640.5627
NODDeveloping tillers at six leaf stage, 3rd internode20.28824.631819.882476.7232
CAR5Developing grain, bracts removed (5 DPA)38.458241.26338.856739.6785
CAR15Developing grain, bracts removed (15 DPA)17.625717.127815.112739.8852



CDS Structure of MLOC_62855






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62855.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365141NoneNoneNoneNone
MLOC_62855.1CUST_18263_PI427708080AvailableAvailablecontig_47031 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g43710.1 +2 8e-166 479 240/301 (80%) 13106.m04581 protein glucosidase II beta subunit-like domain containing protein, expressed
TAIR PP10 AT5G35080.1 +2 8e-76 246 124/262 (47%) INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011), Glucosidase II beta subunit-like (InterPro:IPR012913); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:13354552-13356725 REVERSE LENGTH=282