- Predicted Gene MLOC_62855
MLOC_62855 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 33.7442 | 25.2901 | 26.1064 | 28.3734 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 19.0128 | 16.4803 | 20.9778 | 16.0247 |
| INF1 | Young developing inflorescences (5mm) | 16.8698 | 19.6544 | 21.1141 | 16.2408 |
| INF2 | Developing inflorescences (1-1.5 cm) | 19.2452 | 20.4482 | 23.3774 | 23.0597 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 38.1212 | 32.9877 | 29.6626 | 40.5627 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 20.288 | 24.6318 | 19.8824 | 76.7232 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 38.4582 | 41.263 | 38.8567 | 39.6785 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 17.6257 | 17.1278 | 15.1127 | 39.8852 |
CDS Structure of MLOC_62855
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_62855.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os06g43710.1 |
+2 |
8e-166 |
479 |
240/301 (80%) |
13106.m04581 protein glucosidase II beta subunit-like domain containing protein, expressed |
| TAIR PP10 |
AT5G35080.1 |
+2 |
8e-76 |
246 |
124/262 (47%) |
INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011), Glucosidase II beta subunit-like (InterPro:IPR012913); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:13354552-13356725 REVERSE LENGTH=282 |