MLOC_62831 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.176813.393313.667914.3065
LEAShoots from the seedlings (10 cm shoot stage)13.824613.708617.089211.7459
INF1Young developing inflorescences (5mm)19.365621.063921.968615.0871
INF2Developing inflorescences (1-1.5 cm)16.014119.619617.801517.032
ROORoots from the seedlings (10 cm shoot stage)14.911813.49210.768514.794
NODDeveloping tillers at six leaf stage, 3rd internode6.334279.8170610.847730.5431
CAR5Developing grain, bracts removed (5 DPA)12.361914.259513.983111.2687
CAR15Developing grain, bracts removed (15 DPA)4.246835.666624.309039.2492



CDS Structure of MLOC_62831






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62831.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_62831.1CUST_8537_PI427708083AvailableAvailablecontig_47012 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g10050.2 -1 3e-97 301 179/188 (95%) 13101.m14995 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
TAIR PP10 AT1G55150.1 -1 1e-84 268 159/187 (85%) DEA(D/H)-box RNA helicase family protein | chr1:20574634-20577141 FORWARD LENGTH=501