MLOC_62791 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.162426.820496.31667.81347
LEAShoots from the seedlings (10 cm shoot stage)4.396095.106034.9574.40906
INF1Young developing inflorescences (5mm)0.1436780.1864410.1316630.151645
INF2Developing inflorescences (1-1.5 cm)0.1069550.1797070.3145260.244833
ROORoots from the seedlings (10 cm shoot stage)21.074618.5817.164925.1412
NODDeveloping tillers at six leaf stage, 3rd internode4.66735.64566.2889619.8912
CAR5Developing grain, bracts removed (5 DPA)6.287746.453917.31757.38018
CAR15Developing grain, bracts removed (15 DPA)1.504171.341141.725744.01936



CDS Structure of MLOC_62791






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62791.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365833NoneNoneNoneNone
MLOC_62791.3CUST_4690_PI427708080AvailableAvailablecontig_46973 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g01600.1 -2 0.0 717 402/483 (83%) 13108.m00082 protein polygalacturonase, putative, expressed
TAIR PP10 AT4G33440.1 -2 0.0 537 272/417 (65%) Pectin lyase-like superfamily protein | chr4:16092020-16094732 FORWARD LENGTH=475