MLOC_62784 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.049316.958319.378324.0321
LEAShoots from the seedlings (10 cm shoot stage)8.323495.880496.770076.60039
INF1Young developing inflorescences (5mm)19.622921.536121.077420.6413
INF2Developing inflorescences (1-1.5 cm)14.777217.395418.196521.6789
ROORoots from the seedlings (10 cm shoot stage)18.541115.25917.689624.4432
NODDeveloping tillers at six leaf stage, 3rd internode4.17574.933056.8289117.9934
CAR5Developing grain, bracts removed (5 DPA)15.641817.297817.486420.3311
CAR15Developing grain, bracts removed (15 DPA)3.511913.34413.502199.56621



CDS Structure of MLOC_62784






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62784.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251144.1NoneNoneNoneNone
MLOC_62784.1CUST_4688_PI427708080AvailableAvailablecontig_46961 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g58750.1 +3 0.0 525 297/345 (86%) 13101.m06241 protein expressed protein
TAIR PP10 AT5G62270.1 +3 2e-119 361 196/297 (66%) BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25012227-25014007 FORWARD LENGTH=383