MLOC_62751 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.25334.534354.043774.19171
LEAShoots from the seedlings (10 cm shoot stage)4.810674.816524.280814.44432
INF1Young developing inflorescences (5mm)10.783410.847312.58989.85748
INF2Developing inflorescences (1-1.5 cm)25.741915.491518.930222.5655
ROORoots from the seedlings (10 cm shoot stage)1.254512.774592.788713.66173
NODDeveloping tillers at six leaf stage, 3rd internode1.357112.550474.703911.0583
CAR5Developing grain, bracts removed (5 DPA)6.485216.317986.731146.80573
CAR15Developing grain, bracts removed (15 DPA)4.476974.508044.38710.4871



CDS Structure of MLOC_62751






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62751.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_62751.1CUST_14472_PI427708080AvailableAvailablecontig_46930 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g43790.1 +3 0.0 605 338/534 (63%) 13106.m04589 protein transcription initiation factor TFIID subunit 1, putative, expressed
TAIR PP10 AT1G32750.1 +1 4e-108 373 199/322 (62%) | Symbols: HAF01, HAF1, HAC13, GTD1, TAF1 | HAC13 protein (HAC13) | chr1:11846385-11856261 REVERSE LENGTH=1919