MLOC_62700 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains113.121130.386135.292119.285
LEAShoots from the seedlings (10 cm shoot stage)102.28669.665983.858768.8629
INF1Young developing inflorescences (5mm)101.3379.223563.938365.0701
INF2Developing inflorescences (1-1.5 cm)47.850156.271958.342454.5517
ROORoots from the seedlings (10 cm shoot stage)39.604699.378293.819697.6128
NODDeveloping tillers at six leaf stage, 3rd internode35.884630.996129.717895.7245
CAR5Developing grain, bracts removed (5 DPA)79.943380.001279.232171.2231
CAR15Developing grain, bracts removed (15 DPA)9.327339.9932911.700921.6497



CDS Structure of MLOC_62700






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62700.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250988.1NoneNoneNoneNone
MLOC_62700.1CUST_4672_PI427708080AvailableAvailablecontig_46873 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g43170.1 -3 0.0 866 426/465 (92%) 13108.m04673 protein hydroxymethylglutaryl-CoA synthase, putative, expressed
TAIR PP10 AT4G11820.2 -3 0.0 723 352/468 (75%) | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase | chr4:7109124-7111901 REVERSE LENGTH=461