MLOC_62667 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains60.310366.139669.974869.3361
LEAShoots from the seedlings (10 cm shoot stage)40.577357.196737.848540.2922
INF1Young developing inflorescences (5mm)25.854332.793730.973925.8331
INF2Developing inflorescences (1-1.5 cm)31.404833.726133.097736.469
ROORoots from the seedlings (10 cm shoot stage)48.361574.952249.593289.8587
NODDeveloping tillers at six leaf stage, 3rd internode30.230935.733664.4706145.174
CAR5Developing grain, bracts removed (5 DPA)115.81118.387125.295118.285
CAR15Developing grain, bracts removed (15 DPA)70.471569.324960.8699159.992



CDS Structure of MLOC_62667






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62667.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248458.1NoneNoneNoneNone
MLOC_62667.3CUST_4669_PI427708080AvailableAvailablecontig_46834 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g07760.2 +2 0.0 794 420/457 (92%) 13102.m00888 protein aldehyde dehydrogenase, putative, expressed
TAIR PP10 AT1G79440.1 +2 0.0 672 355/457 (78%) | Symbols: ALDH5F1, SSADH1, SSADH | aldehyde dehydrogenase 5F1 | chr1:29882525-29887275 REVERSE LENGTH=528