MLOC_62654 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.959466.41245.081986.00678
LEAShoots from the seedlings (10 cm shoot stage)5.090864.164954.737684.01196
INF1Young developing inflorescences (5mm)7.081097.766067.262346.13024
INF2Developing inflorescences (1-1.5 cm)6.673168.265638.003198.08022
ROORoots from the seedlings (10 cm shoot stage)5.03165.699374.933366.52728
NODDeveloping tillers at six leaf stage, 3rd internode4.559544.935014.3985715.5257
CAR5Developing grain, bracts removed (5 DPA)6.82666.353017.484156.28663
CAR15Developing grain, bracts removed (15 DPA)7.102318.535365.9848616.6484



CDS Structure of MLOC_62654






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62654.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376989NoneNoneNoneNone
MLOC_62654.4CUST_4664_PI427708080AvailableAvailablecontig_46816 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g43470.1 +3 0.0 605 309/341 (91%) 13105.m04578 protein outer membrane protein, OMP85 family, putative, expressed
TAIR PP10 AT3G44160.1 +3 9e-149 435 213/341 (62%) Outer membrane OMP85 family protein | chr3:15889225-15891814 REVERSE LENGTH=362