MLOC_62649 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.634615.313686.011725.75226
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.2445040.03635040.07522280.104531
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)221.229115.903100.386123.822
NODDeveloping tillers at six leaf stage, 3rd internode0.5058520.3770810.392390.856619
CAR5Developing grain, bracts removed (5 DPA)0.2967120.2035340.1950330.226718
CAR15Developing grain, bracts removed (15 DPA)0.1316320.2543070.03778610.410544



CDS Structure of MLOC_62649






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62649.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_62649.1CUST_14458_PI427708080AvailableAvailablecontig_46809 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g26630.1 -3 3e-133 300 160/179 (89%) 13107.m02641 protein aquaporin protein, putative, expressed
TAIR PP10 AT2G37170.1 -3 9e-110 268 144/180 (80%) | Symbols: PIP2B, PIP2;2 | plasma membrane intrinsic protein 2 | chr2:15613624-15614791 REVERSE LENGTH=285