MLOC_62602 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.4665411.027911.47136.25218
LEAShoots from the seedlings (10 cm shoot stage)10.96087.663267.066074.8478
INF1Young developing inflorescences (5mm)24.326225.713732.895312.6479
INF2Developing inflorescences (1-1.5 cm)57.762530.71941.415731.8527
ROORoots from the seedlings (10 cm shoot stage)5.117998.162578.518395.17225
NODDeveloping tillers at six leaf stage, 3rd internode4.487855.637616.5873612.7408
CAR5Developing grain, bracts removed (5 DPA)13.659614.399415.58288.20234
CAR15Developing grain, bracts removed (15 DPA)10.50748.273648.0127312.2794



CDS Structure of MLOC_62602






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62602.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372164NoneNoneNoneNone
MLOC_62602.2CUST_368_PI427708083AvailableAvailablecontig_467462 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g52140.2 +3 6e-74 234 111/117 (95%) 13102.m05942 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT5G10350.2 +3 2e-54 182 89/111 (80%) RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:3255808-3257746 REVERSE LENGTH=202