MLOC_6256 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 17.2342 | 24.5747 | 18.8908 | 19.3387 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 252.731 | 462.671 | 501.542 | 304.898 |
| INF1 | Young developing inflorescences (5mm) | 11.7624 | 10.8221 | 12.2993 | 9.54041 |
| INF2 | Developing inflorescences (1-1.5 cm) | 5.09901 | 6.39906 | 7.22047 | 6.45913 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 0.945765 | 2.32751 | 6.35139 | 2.69041 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 283.12 | 226.666 | 277.801 | 630.058 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 47.8549 | 64.1319 | 52.4958 | 52.6254 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 5.09543 | 5.68874 | 4.74517 | 12.2628 |
CDS Structure of MLOC_6256
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_6256.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os06g15400.1 |
+1 |
2e-45 |
160 |
126/159 (79%) |
13106.m01703 protein expressed protein |
| TAIR PP10 |
AT4G01150.1 |
+1 |
1e-23 |
99 |
74/107 (69%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:493692-494668 FORWARD LENGTH=164 |
