MLOC_62519 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.436954.462524.312035.75737
LEAShoots from the seedlings (10 cm shoot stage)29.268485.691875.424867.9213
INF1Young developing inflorescences (5mm)0.1174250.1141980.2399860.169952
INF2Developing inflorescences (1-1.5 cm)0.2506650.2333070.333390.357715
ROORoots from the seedlings (10 cm shoot stage)23.923419.075817.608730.0576
NODDeveloping tillers at six leaf stage, 3rd internode1.214371.999283.618128.7757
CAR5Developing grain, bracts removed (5 DPA)0.473280.5385660.3932650.589074
CAR15Developing grain, bracts removed (15 DPA)0.7719530.5512880.5780041.82637



CDS Structure of MLOC_62519






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62519.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249589.1NoneNoneNoneNone
MLOC_62519.1CUST_4638_PI427708080AvailableAvailablecontig_46656 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g51400.3 -1 4e-124 374 231/384 (60%) 13104.m05241 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT5G10650.2 -1 3e-37 145 66/113 (58%) RING/U-box superfamily protein | chr5:3365237-3367263 REVERSE LENGTH=525