MLOC_62516 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.829570.9956031.35061.25951
LEAShoots from the seedlings (10 cm shoot stage)5.882865.888684.374224.05474
INF1Young developing inflorescences (5mm)2.86192.905982.668042.52752
INF2Developing inflorescences (1-1.5 cm)2.414252.244943.547692.99585
ROORoots from the seedlings (10 cm shoot stage)1.068251.937511.467511.8115
NODDeveloping tillers at six leaf stage, 3rd internode1.140722.328151.340114.92501
CAR5Developing grain, bracts removed (5 DPA)12.143111.1129.3769310.9756
CAR15Developing grain, bracts removed (15 DPA)2.45362.406823.404766.9751



CDS Structure of MLOC_62516






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62516.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357305NoneNoneNoneNone
MLOC_62516.1CUST_4637_PI427708080AvailableAvailablecontig_46653 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g43580.1 -3 9e-103 320 208/323 (64%) 13107.m04579 protein MYB family transcription factor, putative, expressed
TAIR PP10 AT3G47600.1 -3 2e-80 260 128/186 (69%) | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain protein 94 | chr3:17539627-17541035 REVERSE LENGTH=333