- Predicted Gene MLOC_62478
MLOC_62478 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 17.033 | 18.1482 | 15.1876 | 16.8936 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 38.8102 | 60.1966 | 58.0561 | 42.7812 |
INF1 | Young developing inflorescences (5mm) | 9.20225 | 8.74857 | 8.80636 | 7.56387 |
INF2 | Developing inflorescences (1-1.5 cm) | 23.7511 | 12.9967 | 19.9499 | 19.6837 |
ROO | Roots from the seedlings (10 cm shoot stage) | 31.3243 | 24.7058 | 25.8942 | 28.552 |
NOD | Developing tillers at six leaf stage, 3rd internode | 58.6864 | 64.7437 | 83.6852 | 212.56 |
CAR5 | Developing grain, bracts removed (5 DPA) | 19.5657 | 15.2359 | 17.0974 | 16.2729 |
CAR15 | Developing grain, bracts removed (15 DPA) | 22.4603 | 22.0839 | 19.1087 | 48.4207 |
CDS Structure of MLOC_62478
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_62478.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g39790.2 |
-2 |
0.0 |
599 |
322/391 (82%) |
13102.m04418 protein CPuORF9 - conserved peptide uORF-containing transcript, expressed |
TAIR PP10 |
AT3G25570.2 |
-2 |
4e-107 |
334 |
198/354 (56%) |
Adenosylmethionine decarboxylase family protein | chr3:9287413-9288462 REVERSE LENGTH=349 |