MLOC_62478 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.03318.148215.187616.8936
LEAShoots from the seedlings (10 cm shoot stage)38.810260.196658.056142.7812
INF1Young developing inflorescences (5mm)9.202258.748578.806367.56387
INF2Developing inflorescences (1-1.5 cm)23.751112.996719.949919.6837
ROORoots from the seedlings (10 cm shoot stage)31.324324.705825.894228.552
NODDeveloping tillers at six leaf stage, 3rd internode58.686464.743783.6852212.56
CAR5Developing grain, bracts removed (5 DPA)19.565715.235917.097416.2729
CAR15Developing grain, bracts removed (15 DPA)22.460322.083919.108748.4207



CDS Structure of MLOC_62478






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62478.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250521.1NoneNoneNoneNone
MLOC_62478.1CUST_4633_PI427708080AvailableAvailablecontig_46603 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g39790.2 -2 0.0 599 322/391 (82%) 13102.m04418 protein CPuORF9 - conserved peptide uORF-containing transcript, expressed
TAIR PP10 AT3G25570.2 -2 4e-107 334 198/354 (56%) Adenosylmethionine decarboxylase family protein | chr3:9287413-9288462 REVERSE LENGTH=349