MLOC_62475 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains58.540162.267863.169159.0558
LEAShoots from the seedlings (10 cm shoot stage)15.14921.899434.721475.89745
INF1Young developing inflorescences (5mm)2.586311.843522.184331.95877
INF2Developing inflorescences (1-1.5 cm)1.726892.265813.081372.5657
ROORoots from the seedlings (10 cm shoot stage)22.901918.352624.511821.3038
NODDeveloping tillers at six leaf stage, 3rd internode13.029914.51528.5551334.2196
CAR5Developing grain, bracts removed (5 DPA)139.861111.713113.489120.574
CAR15Developing grain, bracts removed (15 DPA)11.31537.4114512.735125.5985



CDS Structure of MLOC_62475






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62475.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_62475.1CUST_14433_PI427708080AvailableAvailablecontig_466018 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g51620.1 -3 0.0 1292 620/746 (83%) 13102.m05875 protein glycosyl hydrolase family 3 protein, putative, expressed
TAIR PP10 AT1G78060.1 -3 0.0 921 453/749 (60%) Glycosyl hydrolase family protein | chr1:29349796-29352868 REVERSE LENGTH=767