MLOC_62438 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.67617.363097.602889.8109
LEAShoots from the seedlings (10 cm shoot stage)6.568035.145717.084386.10614
INF1Young developing inflorescences (5mm)13.59313.822213.596213.2305
INF2Developing inflorescences (1-1.5 cm)10.562111.773612.065214.5586
ROORoots from the seedlings (10 cm shoot stage)6.054778.474076.7884711.8903
NODDeveloping tillers at six leaf stage, 3rd internode1.746092.766524.9967212.5667
CAR5Developing grain, bracts removed (5 DPA)10.48612.144611.938213.6116
CAR15Developing grain, bracts removed (15 DPA)6.663467.383445.8093218.2622



CDS Structure of MLOC_62438






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62438.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363413NoneNoneNoneNone
MLOC_62438.1CUST_4632_PI427708080AvailableAvailablecontig_46566 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g68310.1 +2 2e-140 412 224/316 (71%) 13101.m07433 protein sas10/Utp3 family protein
TAIR PP10 AT1G07840.1 +2 8e-83 262 155/287 (54%) Sas10/Utp3/C1D family | chr1:2424603-2426425 FORWARD LENGTH=312