MLOC_62420 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.3926211.171112.657110.7828
LEAShoots from the seedlings (10 cm shoot stage)19.775818.103914.60914.2434
INF1Young developing inflorescences (5mm)11.447510.474110.82958.84781
INF2Developing inflorescences (1-1.5 cm)15.823716.435116.708516.7195
ROORoots from the seedlings (10 cm shoot stage)11.457316.749713.771817.782
NODDeveloping tillers at six leaf stage, 3rd internode15.298812.952514.112536.9412
CAR5Developing grain, bracts removed (5 DPA)15.423416.501115.224214.4148
CAR15Developing grain, bracts removed (15 DPA)7.63896.390036.938815.4281



CDS Structure of MLOC_62420






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62420.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_62420.1NoneAvailableAvailablecontig_46545 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g48964.1 -2 5e-86 278 132/165 (80%) 13102.m05542 protein WD-40 repeat family protein, putative, expressed
TAIR PP10 AT5G56190.1 -2 4e-79 259 119/165 (72%) Transducin/WD40 repeat-like superfamily protein | chr5:22742563-22744909 FORWARD LENGTH=441