- Predicted Gene MLOC_62417
MLOC_62417 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.157332 | 0.168498 | 0.0918775 | 0.166761 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 9.37362 | 17.5833 | 21.2196 | 14.4624 |
INF1 | Young developing inflorescences (5mm) | 0.224647 | 0.270765 | 0.234231 | 0.264977 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.303972 | 0.261995 | 0.302063 | 0.41699 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0.050783 | 0.203897 | 0.0827843 |
NOD | Developing tillers at six leaf stage, 3rd internode | 11.3996 | 12.5734 | 19.0392 | 44.4627 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.6259 | 1.85003 | 1.37516 | 2.00333 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.740926 | 0.985613 | 0.552247 | 2.10652 |
CDS Structure of MLOC_62417
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_62417.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g38570.1 |
-2 |
0.0 |
875 |
446/524 (85%) |
13105.m04048 protein riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed |
TAIR PP10 |
AT5G59750.1 |
-2 |
0.0 |
674 |
333/435 (77%) |
DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II | chr5:24073397-24075411 FORWARD LENGTH=509 |