MLOC_62417 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1573320.1684980.09187750.166761
LEAShoots from the seedlings (10 cm shoot stage)9.3736217.583321.219614.4624
INF1Young developing inflorescences (5mm)0.2246470.2707650.2342310.264977
INF2Developing inflorescences (1-1.5 cm)0.3039720.2619950.3020630.41699
ROORoots from the seedlings (10 cm shoot stage)00.0507830.2038970.0827843
NODDeveloping tillers at six leaf stage, 3rd internode11.399612.573419.039244.4627
CAR5Developing grain, bracts removed (5 DPA)1.62591.850031.375162.00333
CAR15Developing grain, bracts removed (15 DPA)0.7409260.9856130.5522472.10652



CDS Structure of MLOC_62417






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62417.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371939NoneNoneNoneNone
MLOC_62417.3CUST_4624_PI427708080AvailableAvailablecontig_46541 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g38570.1 -2 0.0 875 446/524 (85%) 13105.m04048 protein riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed
TAIR PP10 AT5G59750.1 -2 0.0 674 333/435 (77%) DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II | chr5:24073397-24075411 FORWARD LENGTH=509