MLOC_62416 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.58059.923912.79319.011
LEAShoots from the seedlings (10 cm shoot stage)4.133440.20489901.5843
INF1Young developing inflorescences (5mm)24.405227.122831.186830.116
INF2Developing inflorescences (1-1.5 cm)13.125122.337619.013327.2323
ROORoots from the seedlings (10 cm shoot stage)12.8038.625898.5464512.8769
NODDeveloping tillers at six leaf stage, 3rd internode00.2843960.2338850.597875
CAR5Developing grain, bracts removed (5 DPA)7.194667.644288.8032110.2202
CAR15Developing grain, bracts removed (15 DPA)0.6836360.1204040.4353331.7341



CDS Structure of MLOC_62416






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62416.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_62416.1CUST_12905_PI427708083AvailableAvailablecontig_46541 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g62230.1 +1 3e-48 159 82/83 (99%) 13101.m06658 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G59910.1 +1 2e-47 156 80/83 (96%) | Symbols: HTB4 | Histone superfamily protein | chr5:24127206-24127658 FORWARD LENGTH=150