MLOC_62403 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.6529613.104414.49611.3323
LEAShoots from the seedlings (10 cm shoot stage)10.15519.197299.469917.60424
INF1Young developing inflorescences (5mm)12.22669.7992613.1799.09436
INF2Developing inflorescences (1-1.5 cm)13.869113.468715.869113.7725
ROORoots from the seedlings (10 cm shoot stage)12.716917.285615.281716.9985
NODDeveloping tillers at six leaf stage, 3rd internode8.400634.165434.1779612.7053
CAR5Developing grain, bracts removed (5 DPA)9.593459.9671410.78288.66007
CAR15Developing grain, bracts removed (15 DPA)2.806482.131933.323885.58956



CDS Structure of MLOC_62403






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62403.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360498NoneNoneNoneNone
MLOC_62403.4CUST_365_PI427708083AvailableAvailablecontig_46531 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g32180.1 +2 6e-70 227 107/126 (85%) 13112.m03281 protein cornichon protein, putative, expressed
TAIR PP10 AT1G12390.1 +2 5e-39 141 67/119 (56%) Cornichon family protein | chr1:4220347-4221481 FORWARD LENGTH=137