MLOC_62398 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.955629.62629.605529.7439
LEAShoots from the seedlings (10 cm shoot stage)30.336431.7128.259128.0654
INF1Young developing inflorescences (5mm)47.623453.353258.420346.7796
INF2Developing inflorescences (1-1.5 cm)74.171168.981768.613580.498
ROORoots from the seedlings (10 cm shoot stage)29.483539.037530.87250.529
NODDeveloping tillers at six leaf stage, 3rd internode32.525541.068432.6456150.431
CAR5Developing grain, bracts removed (5 DPA)50.320249.435552.358652.0733
CAR15Developing grain, bracts removed (15 DPA)57.418956.110557.6289135.125



CDS Structure of MLOC_62398






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62398.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370572NoneNoneNoneNone
MLOC_62398.2CUST_4622_PI427708080AvailableAvailablecontig_46527 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g55030.1 -3 0.0 1280 632/732 (86%) 13104.m05698 protein cullin, putative, expressed
TAIR PP10 AT1G26830.1 -3 0.0 1057 521/733 (71%) | Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 | cullin 3 | chr1:9296063-9298374 FORWARD LENGTH=732