MLOC_62365 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.693867.64657.948370.7809
LEAShoots from the seedlings (10 cm shoot stage)56.547853.940337.733747.5045
INF1Young developing inflorescences (5mm)116.948103.59991.0116103.534
INF2Developing inflorescences (1-1.5 cm)169.402123.652118.365173.791
ROORoots from the seedlings (10 cm shoot stage)38.408347.525147.018970.9753
NODDeveloping tillers at six leaf stage, 3rd internode27.33518.786318.114766.6484
CAR5Developing grain, bracts removed (5 DPA)80.926673.943367.299686.8042
CAR15Developing grain, bracts removed (15 DPA)18.244816.848516.324647.3998



CDS Structure of MLOC_62365






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62365.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_62365.1CUST_14418_PI427708080AvailableAvailablecontig_464906 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g09510.1 +1 1e-21 92 45/49 (92%) 13107.m00958 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 AT5G62640.2 +1 4e-20 87 61/78 (78%) | Symbols: ELF5 | proline-rich family protein | chr5:25149584-25152351 REVERSE LENGTH=514