MLOC_62278 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.88382.042532.301042.19121
LEAShoots from the seedlings (10 cm shoot stage)0.7612060.1878640.3354610.320205
INF1Young developing inflorescences (5mm)2.262631.683812.598891.64145
INF2Developing inflorescences (1-1.5 cm)1.445291.713132.29351.67946
ROORoots from the seedlings (10 cm shoot stage)1.451321.215141.507451.27602
NODDeveloping tillers at six leaf stage, 3rd internode2.885651.186562.119333.97615
CAR5Developing grain, bracts removed (5 DPA)0.1641310.1845990.139660.140403
CAR15Developing grain, bracts removed (15 DPA)0.04029650.031262900.0679978



CDS Structure of MLOC_62278






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62278.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_62278.1CUST_14396_PI427708080AvailableAvailablecontig_46379 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g23960.1 -3 2e-75 263 196/294 (67%) 13103.m02833 protein IQ calmodulin-binding motif family protein, putative, expressed
TAIR PP10 AT4G31790.2 +3 2e-35 139 62/76 (82%) Tetrapyrrole (Corrin/Porphyrin) Methylases | chr4:15377479-15378530 FORWARD LENGTH=277