MLOC_62277 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.954610.431810.173910.313
LEAShoots from the seedlings (10 cm shoot stage)2.967182.980291.984362.17169
INF1Young developing inflorescences (5mm)12.674615.066814.426212.1827
INF2Developing inflorescences (1-1.5 cm)5.907967.898477.696737.72851
ROORoots from the seedlings (10 cm shoot stage)8.553559.2436910.941310.4684
NODDeveloping tillers at six leaf stage, 3rd internode2.945213.768655.2850911.1024
CAR5Developing grain, bracts removed (5 DPA)6.767856.382625.981516.02174
CAR15Developing grain, bracts removed (15 DPA)0.7999940.6432030.9842861.82



CDS Structure of MLOC_62277






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62277.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248743.1NoneNoneNoneNone
MLOC_62277.1CUST_4600_PI427708080AvailableAvailablecontig_46379 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g23970.2 +3 5e-178 523 259/273 (95%) 13103.m02835 protein diphthine synthase, putative, expressed
TAIR PP10 AT4G31790.2 +3 3e-141 427 208/274 (76%) Tetrapyrrole (Corrin/Porphyrin) Methylases | chr4:15377479-15378530 FORWARD LENGTH=277