MLOC_62249 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.730922.257319.990122.6929
LEAShoots from the seedlings (10 cm shoot stage)17.93699.8791612.333511.5889
INF1Young developing inflorescences (5mm)15.046415.532316.395513.9731
INF2Developing inflorescences (1-1.5 cm)12.751315.106913.005515.8424
ROORoots from the seedlings (10 cm shoot stage)22.286624.960217.531329.7773
NODDeveloping tillers at six leaf stage, 3rd internode23.836127.155617.928587.0924
CAR5Developing grain, bracts removed (5 DPA)30.641432.517733.38632.9576
CAR15Developing grain, bracts removed (15 DPA)7.83737.92677.5113619.3771



CDS Structure of MLOC_62249






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62249.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355801NoneNoneNoneNone
MLOC_62249.2CUST_4594_PI427708080AvailableAvailablecontig_46350 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g42320.1 -2 0.0 915 530/625 (85%) 13103.m04556 protein Sec1 family transport protein, putative, expressed
TAIR PP10 AT2G17980.1 -2 0.0 676 396/621 (64%) | Symbols: ATSLY1 | Sec1/munc18-like (SM) proteins superfamily | chr2:7824352-7826404 FORWARD LENGTH=627