MLOC_62205 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.665483.042543.321033.49123
LEAShoots from the seedlings (10 cm shoot stage)4.096163.300432.710862.91817
INF1Young developing inflorescences (5mm)3.954574.178083.372933.46003
INF2Developing inflorescences (1-1.5 cm)3.199584.146553.875444.31645
ROORoots from the seedlings (10 cm shoot stage)6.356274.345314.939215.90567
NODDeveloping tillers at six leaf stage, 3rd internode10.480110.774910.567230.2718
CAR5Developing grain, bracts removed (5 DPA)5.285415.946156.279435.98838
CAR15Developing grain, bracts removed (15 DPA)4.577283.404884.128999.85791



CDS Structure of MLOC_62205






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62205.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374723NoneNoneNoneNone
MLOC_62205.2CUST_4587_PI427708080AvailableAvailablecontig_46294 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g26890.1 +1 3e-179 535 299/377 (79%) 13102.m02923 protein PPR repeat containing protein
TAIR PP10 AT5G18475.1 +1 6e-90 299 144/315 (46%) Pentatricopeptide repeat (PPR) superfamily protein | chr5:6129255-6130775 REVERSE LENGTH=506