- Predicted Gene MLOC_62205
MLOC_62205 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 3.66548 | 3.04254 | 3.32103 | 3.49123 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 4.09616 | 3.30043 | 2.71086 | 2.91817 |
INF1 | Young developing inflorescences (5mm) | 3.95457 | 4.17808 | 3.37293 | 3.46003 |
INF2 | Developing inflorescences (1-1.5 cm) | 3.19958 | 4.14655 | 3.87544 | 4.31645 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.35627 | 4.34531 | 4.93921 | 5.90567 |
NOD | Developing tillers at six leaf stage, 3rd internode | 10.4801 | 10.7749 | 10.5672 | 30.2718 |
CAR5 | Developing grain, bracts removed (5 DPA) | 5.28541 | 5.94615 | 6.27943 | 5.98838 |
CAR15 | Developing grain, bracts removed (15 DPA) | 4.57728 | 3.40488 | 4.12899 | 9.85791 |
CDS Structure of MLOC_62205
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_62205.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g26890.1 |
+1 |
3e-179 |
535 |
299/377 (79%) |
13102.m02923 protein PPR repeat containing protein |
TAIR PP10 |
AT5G18475.1 |
+1 |
6e-90 |
299 |
144/315 (46%) |
Pentatricopeptide repeat (PPR) superfamily protein | chr5:6129255-6130775 REVERSE LENGTH=506 |