MLOC_62183 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.167513.117314.148912.0451
LEAShoots from the seedlings (10 cm shoot stage)7.433786.083687.538075.85623
INF1Young developing inflorescences (5mm)9.102449.652418.964057.60849
INF2Developing inflorescences (1-1.5 cm)6.9101610.67397.405589.24753
ROORoots from the seedlings (10 cm shoot stage)13.204312.06419.5896213.7402
NODDeveloping tillers at six leaf stage, 3rd internode8.9361411.53411.976236.9327
CAR5Developing grain, bracts removed (5 DPA)10.939510.23739.446269.59406
CAR15Developing grain, bracts removed (15 DPA)1.054251.648371.271742.95652



CDS Structure of MLOC_62183






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62183.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358286NoneNoneNoneNone
MLOC_62183.3CUST_4581_PI427708080AvailableAvailablecontig_46271 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g30970.1 -3 0.0 875 454/538 (84%) 13105.m03178 protein copine, putative, expressed
TAIR PP10 AT1G08860.1 -3 0.0 654 359/580 (62%) | Symbols: BON3 | Calcium-dependent phospholipid-binding Copine family protein | chr1:2842153-2846138 FORWARD LENGTH=584