MLOC_62101 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.89546.412125.627686.91393
LEAShoots from the seedlings (10 cm shoot stage)24.54031.847953.62778.2736
INF1Young developing inflorescences (5mm)51.520761.433654.03347.104
INF2Developing inflorescences (1-1.5 cm)43.519840.176544.735945.1046
ROORoots from the seedlings (10 cm shoot stage)3.694338.3206312.12578.37498
NODDeveloping tillers at six leaf stage, 3rd internode1.31590.8042710.09515461.64261
CAR5Developing grain, bracts removed (5 DPA)14.716516.677116.528114.9398
CAR15Developing grain, bracts removed (15 DPA)1.151740.3539270.8983451.89559



CDS Structure of MLOC_62101






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62101.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248669.1NoneNoneNoneNone
MLOC_62101.1CUST_4570_PI427708080AvailableAvailablecontig_46194 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g39110.1 +2 5e-33 121 48/69 (70%) 13104.m03776 protein GASR4 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed
TAIR PP10 AT5G14920.1 +2 2e-19 87 34/61 (56%) Gibberellin-regulated family protein | chr5:4826598-4827761 FORWARD LENGTH=275