MLOC_62097 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains000.151870.097187
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.0592028000.057629
INF2Developing inflorescences (1-1.5 cm)0.07984570.01492120.02219920.0433947
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)4.419844.053424.326233.94373
CAR15Developing grain, bracts removed (15 DPA)7.302426.68446.9655214.7432



CDS Structure of MLOC_62097






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62097.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375124NoneNoneNoneNone
MLOC_62097.2CUST_18246_PI427708080AvailableAvailablecontig_46113 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g51110.1 -3 9e-143 451 315/867 (36%) 13105.m05498 protein expressed protein
TAIR PP10 AT1G24190.1 -3 4e-37 151 123/410 (30%) | Symbols: SIN3, ATSIN3, SNL3 | SIN3-like 3 | chr1:8563858-8569927 REVERSE LENGTH=1330