MLOC_62056 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains73.7803114.067104.227104.308
LEAShoots from the seedlings (10 cm shoot stage)85.426659.931554.127860.0338
INF1Young developing inflorescences (5mm)244.531229.47210.304191.968
INF2Developing inflorescences (1-1.5 cm)226.79196.396198.484228.306
ROORoots from the seedlings (10 cm shoot stage)39.456280.141663.542794.8984
NODDeveloping tillers at six leaf stage, 3rd internode24.430822.944232.343985.8198
CAR5Developing grain, bracts removed (5 DPA)134.101129.962136.519132.405
CAR15Developing grain, bracts removed (15 DPA)64.332460.053558.612138.326



CDS Structure of MLOC_62056






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62056.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248957.1NoneNoneNoneNone
MLOC_62056.2CUST_4566_PI427708080AvailableAvailablecontig_46157 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g03070.1 +2 0.0 1263 765/972 (79%) 13101.m00256 protein transposon protein, putative, unclassified, expressed
TAIR PP10 AT4G11420.1 +2 0.0 1010 551/799 (69%) | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 | eukaryotic translation initiation factor 3A | chr4:6947834-6952053 REVERSE LENGTH=987