MLOC_62049 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.191719.992522.205815.764
LEAShoots from the seedlings (10 cm shoot stage)26.584622.84925.159419.1223
INF1Young developing inflorescences (5mm)30.01833.259237.281322.8041
INF2Developing inflorescences (1-1.5 cm)37.06838.674236.97434.6561
ROORoots from the seedlings (10 cm shoot stage)16.826622.831919.17622.6557
NODDeveloping tillers at six leaf stage, 3rd internode29.155335.482335.1182108.523
CAR5Developing grain, bracts removed (5 DPA)35.224634.699237.968928.295
CAR15Developing grain, bracts removed (15 DPA)45.068740.881939.370278.4485



CDS Structure of MLOC_62049






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62049.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_62049.1CUST_14367_PI427708080AvailableAvailablecontig_46146 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g45080.1 +1 0.0 884 564/787 (72%) 13108.m04915 protein expressed protein
TAIR PP10 AT1G15780.1 +1 2e-143 472 338/778 (43%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). | chr1:5430446-5435921 REVERSE LENGTH=1335