MLOC_62048 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains22.939826.239926.539628.107
LEAShoots from the seedlings (10 cm shoot stage)31.011934.370251.194136.1958
INF1Young developing inflorescences (5mm)42.734442.382650.760339.5795
INF2Developing inflorescences (1-1.5 cm)66.148366.100665.935175.0315
ROORoots from the seedlings (10 cm shoot stage)29.833436.682231.375547.2712
NODDeveloping tillers at six leaf stage, 3rd internode25.400230.105841.6163112.148
CAR5Developing grain, bracts removed (5 DPA)28.196227.200826.916327.8116
CAR15Developing grain, bracts removed (15 DPA)13.183214.226314.029532.5342



CDS Structure of MLOC_62048






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62048.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371578NoneNoneNoneNone
MLOC_62048.1CUST_4564_PI427708080AvailableAvailablecontig_46144 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g41190.2 +2 8e-180 535 360/515 (70%) 13101.m15047 protein glycine-rich protein, putative, expressed
TAIR PP10 AT1G80000.2 +2 1e-45 172 173/519 (33%) CASC3/Barentsz eIF4AIII binding | chr1:30093195-30096742 FORWARD LENGTH=605