MLOC_62030 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains335.428309.54324.752306.544
LEAShoots from the seedlings (10 cm shoot stage)217.433178.688173.615155.619
INF1Young developing inflorescences (5mm)76.886983.575.434963.653
INF2Developing inflorescences (1-1.5 cm)44.988755.381249.748353.6739
ROORoots from the seedlings (10 cm shoot stage)213.495179.971144.741206.22
NODDeveloping tillers at six leaf stage, 3rd internode229.942185.23990.5585562.959
CAR5Developing grain, bracts removed (5 DPA)224.828232.177234.841216.288
CAR15Developing grain, bracts removed (15 DPA)130.397127.173125.05278.668



CDS Structure of MLOC_62030






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62030.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359857NoneNoneNoneNone
MLOC_62030.2CUST_4563_PI427708080AvailableAvailablecontig_46131 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g50480.1 +2 0.0 1079 530/581 (91%) 13103.m05489 protein phosphoglucomutase, putative, expressed
TAIR PP10 AT1G70730.2 +2 0.0 987 492/592 (83%) | Symbols: PGM2 | Phosphoglucomutase/phosphomannomutase family protein | chr1:26669020-26673166 REVERSE LENGTH=605