MLOC_62020 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.0691337000.0909523
LEAShoots from the seedlings (10 cm shoot stage)7.1880121.140927.729916.85
INF1Young developing inflorescences (5mm)0.0231284000.0207376
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.2073280.3429870.4001620.429402
NODDeveloping tillers at six leaf stage, 3rd internode0.3452370.0636490.217020.256904
CAR5Developing grain, bracts removed (5 DPA)0.1884450.2089160.1461290.21264
CAR15Developing grain, bracts removed (15 DPA)0.1257670.198240.09063950.413231



CDS Structure of MLOC_62020






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_62020.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370953NoneNoneNoneNone
MLOC_62020.1CUST_4561_PI427708080AvailableAvailablecontig_46114 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g30100.1 +3 4e-118 355 223/368 (61%) 13108.m03115 protein 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed
TAIR PP10 AT1G06620.1 +3 2e-104 318 185/366 (51%) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365