MLOC_61940 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.988442.345672.190512.96321
LEAShoots from the seedlings (10 cm shoot stage)3.669826.082246.729324.82071
INF1Young developing inflorescences (5mm)1.762552.328992.277042.01072
INF2Developing inflorescences (1-1.5 cm)1.978242.191521.868732.51027
ROORoots from the seedlings (10 cm shoot stage)3.061831.697451.873982.3796
NODDeveloping tillers at six leaf stage, 3rd internode1.814493.667064.7092111.9746
CAR5Developing grain, bracts removed (5 DPA)2.843883.620984.023313.93193
CAR15Developing grain, bracts removed (15 DPA)0.7518090.8442380.6269242.0688



CDS Structure of MLOC_61940






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61940.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358839NoneNoneNoneNone
MLOC_61940.1CUST_4547_PI427708080AvailableAvailablecontig_46024 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g38910.1 +1 1e-39 147 71/90 (79%) 13110.m03544 protein expressed protein
TAIR PP10 AT5G52780.1 +1 2e-21 94 46/89 (52%) Protein of unknown function (DUF3464) | chr5:21390943-21391449 REVERSE LENGTH=168