MLOC_61918 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.554215.470176.174176.38251
LEAShoots from the seedlings (10 cm shoot stage)4.864762.138394.227542.98838
INF1Young developing inflorescences (5mm)4.588878.719668.359645.92811
INF2Developing inflorescences (1-1.5 cm)3.356434.037184.05574.04791
ROORoots from the seedlings (10 cm shoot stage)4.374794.064134.316034.39104
NODDeveloping tillers at six leaf stage, 3rd internode2.696624.033644.2466310.1267
CAR5Developing grain, bracts removed (5 DPA)3.228623.400563.032213.01735
CAR15Developing grain, bracts removed (15 DPA)0.6100980.4776510.5907251.32732



CDS Structure of MLOC_61918






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61918.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61918.1CUST_14350_PI427708080AvailableAvailablecontig_45995 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g47830.1 -1 0.0 775 425/519 (82%) 13107.m05109 protein pectinesterase, putative, expressed
TAIR PP10 AT1G53830.1 -1 1e-134 434 253/524 (48%) | Symbols: ATPME2, PME2 | pectin methylesterase 2 | chr1:20098562-20100745 FORWARD LENGTH=587