MLOC_61901 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.03042420.026601700.0406996
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)17.54916.742222.223417.7766
INF2Developing inflorescences (1-1.5 cm)51.270739.648542.273253.8695
ROORoots from the seedlings (10 cm shoot stage)0.159370.1154610.1673170.196678
NODDeveloping tillers at six leaf stage, 3rd internode0.4222742.974682.2903610.8701
CAR5Developing grain, bracts removed (5 DPA)0.5435120.2845890.3321620.420585
CAR15Developing grain, bracts removed (15 DPA)0.2442920.2379310.07154720.535973



CDS Structure of MLOC_61901






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61901.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249833.1NoneNoneNoneNone
MLOC_61901.1CUST_4539_PI427708080AvailableAvailablecontig_45974 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g01820.2 +2 2e-105 320 217/280 (78%) 13107.m00099 protein OsMADS15 - MADS-box family gene with MIKCc type-box, expressed
TAIR PP10 AT1G69120.1 +2 1e-66 219 121/175 (69%) | Symbols: AP1, AGL7 | K-box region and MADS-box transcription factor family protein | chr1:25982576-25986102 REVERSE LENGTH=256