MLOC_61870 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.072622.387721.589226.2776
LEAShoots from the seedlings (10 cm shoot stage)36.735443.922652.773945.1197
INF1Young developing inflorescences (5mm)14.735417.236218.644415.8491
INF2Developing inflorescences (1-1.5 cm)12.986517.192916.295119.026
ROORoots from the seedlings (10 cm shoot stage)44.307944.2131.976366.0363
NODDeveloping tillers at six leaf stage, 3rd internode39.366570.778665.1745269.545
CAR5Developing grain, bracts removed (5 DPA)19.699222.462222.375323.9567
CAR15Developing grain, bracts removed (15 DPA)8.563379.442249.2088823.1565



CDS Structure of MLOC_61870






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_61870.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_61870.3CUST_14341_PI427708080AvailableAvailablecontig_45948 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g08544.1 +1 3e-144 416 201/213 (94%) 13102.m00988 protein homeobox protein knotted-1, putative, expressed
TAIR PP10 AT5G25220.1 +1 4e-116 348 168/211 (80%) | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3 | chr5:8736208-8738115 FORWARD LENGTH=431